prinseq-software
Table of Contents
prinseq
PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data. It generates summary statistics of your sequences in graphical and tabular format. It is easily configurable and provides a user-friendly interface.
Information
- Version: 0.20.4
- Added: April, 2020
Usage
See versions of prinseq which are available:
$ module avail prinseq
Load a particular version into your environment and run it:
$ module load prinseq/0.20.4 $ prinseq-lite.pl
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget 'https://downloads.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fprinseq%2Ffiles%2Flatest%2Fdownload&ts=1587454520' -O prinseq-lite-0.20.4.tar.gz $ tar xf prinseq-lite-0.20.4.tar.gz $ cd prinseq-lite-0.20.4 $ chmod +x *.pl $ sudo mkdir -p /export/apps/prinseq/0.20.4 $ sudo cp -r * /export/apps/prinseq/0.20.4
prinseq-software.txt · Last modified: 2020/04/21 07:45 by aorth