User Tools

Site Tools


Table of Contents


A statistical framework for ploidy estimation using NGS short-read data.



See which versions of nQuire are available:

$ module avail nQuire

Load one version into your environment and run it:

$ module load nQuire/git-a990a88e
$ nQuire

Note: you can control the number of CPU threads used by nQuire with the -t option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.


Notes from the sysadmin during installation:

$ cd /tmp
$ git clone --recursive
$ cd nQuire
$ make submodules
$ make
$ sudo mkdir -p /export/apps/nQuire/git-a990a88e/bin
$ sudo cp nQuire /export/apps/nQuire/git-a990a88e/bin
$ sudo cp LICENSE /export/apps/nQuire/git-a990a88e
nquire-software.txt · Last modified: 2021/05/10 11:45 by aorth