NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations.

• Version: 0.2.7
• Added: September, 2020
• Link: https://github.com/philres/ngmlr

See which versions of ngmlr are available:

$ module avail ngmlr

Load one version into your environment and run it:

$ module load ngmlr/0.2.7
$ ngmlr

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz
$ tar xf ngmlr-0.2.7-linux-x86_64.tar.gz
$ sudo mkdir -p /export/apps/ngmlr/0.2.7/bin
$ sudo cp ngmlr-0.2.7/ngmlr /export/apps/ngmlr/0.2.7/bin