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ngmlr-software

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ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations.

Information

Usage

See which versions of ngmlr are available:

$ module avail ngmlr

Load one version into your environment and run it:

$ module load ngmlr/0.2.7
$ ngmlr

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz
$ tar xf ngmlr-0.2.7-linux-x86_64.tar.gz
$ sudo mkdir -p /export/apps/ngmlr/0.2.7/bin
$ sudo cp ngmlr-0.2.7/ngmlr /export/apps/ngmlr/0.2.7/bin
ngmlr-software.txt · Last modified: 2020/09/02 09:51 by aorth