NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations.
See which versions of ngmlr are available:
$ module avail ngmlr
Load one version into your environment and run it:
$ module load ngmlr/0.2.7 $ ngmlr
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz $ tar xf ngmlr-0.2.7-linux-x86_64.tar.gz $ sudo mkdir -p /export/apps/ngmlr/0.2.7/bin $ sudo cp ngmlr-0.2.7/ngmlr /export/apps/ngmlr/0.2.7/bin