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Clade assignment, mutation calling, and sequence quality checks. This is the command line version of nextclade.
See versions of nextclade which are available:
$ module avail nextclade
Load one version into your environment and run it:
$ module load nextclade/1.3.0 $ nextclade
Notes from the sysadmin during installation:
$ sudo mkdir -p /export/apps/nextclade/1.3.0/bin $ sudo wget https://github.com/nextstrain/nextclade/releases/download/1.3.0/nextclade-Linux-x86_64 -O /export/apps/nextclade/1.3.0/bin/nextclade $ sudo chmod +x /export/apps/nextclade/1.3.0/bin/nextclade