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nextclade-software

nextclade

Clade assignment, mutation calling, and sequence quality checks. This is the command line version of nextclade.

Information

Usage

See versions of nextclade which are available:

$ module avail nextclade

Load one version into your environment and run it:

$ module load nextclade/1.3.0
$ nextclade

Installation

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/nextclade/1.3.0/bin
$ sudo wget https://github.com/nextstrain/nextclade/releases/download/1.3.0/nextclade-Linux-x86_64 -O /export/apps/nextclade/1.3.0/bin/nextclade
$ sudo chmod +x /export/apps/nextclade/1.3.0/bin/nextclade

Note: nextclade was previously distributed as a Javascript program, but it seems to have been ported to C++ and is now a standalone executable.

nextclade-software.txt · Last modified: 2021/09/06 10:23 by aorth