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nextclade-software [2021/02/14 10:41]
aorth created
nextclade-software [2022/04/01 07:58] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.12.0+  * Version: 1.11.0
   * Added: February, 2021   * Added: February, 2021
 +  * Updated: April, 2022
   * Link: https://github.com/nextstrain/nextclade   * Link: https://github.com/nextstrain/nextclade
  
 ===== Usage ===== ===== Usage =====
  
-See versions of nextclade which are available:+See versions which are available:
 <code>$ module avail nextclade</code> <code>$ module avail nextclade</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load nextclade/0.12.0 +<code>$ module load nextclade/1.11.0 
-$ nextclade.js</code>+$ nextclade</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ sudo yum install rh-nodejs12-nodejs.x86_64 +<code>$ sudo mkdir -p /export/apps/nextclade/1.11.0/bin 
-$ cd /tmp +sudo wget https://github.com/nextstrain/nextclade/releases/download/1.11.0/nextclade-Linux-x86_64 -/export/apps/nextclade/1.11.0/bin/nextclade 
-git clone https://github.com/nextstrain/nextclade.git +$ sudo chmod +x /export/apps/nextclade/1.11.0/bin/nextclade</code> 
-$ cd nextclade + 
-$ git checkout 0.12.0 +**Note**: nextclade was previously distributed as a Javascript program, but it seems to have been ported to C++ and is now a standalone executable.
-$ cd packages/web +
-$ cp .env.example .env +
-$ export PATH=$PATH:/opt/rh/rh-nodejs12/root/usr/bin +
-$ npm config set cache /tmp/aorth-npm +
-$ npm install yarn +
-$ npx yarn cli:prod:build +
-$ sudo mkdir -/export/apps/nextclade/0.12.0/bin +
-$ sudo cp ../cli/dist/nextclade.js /export/apps/nextclade/0.12.0/bin</code>+
nextclade-software.1613299312.txt.gz · Last modified: 2021/02/14 10:41 by aorth