nextclade-software
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nextclade
Clade assignment, mutation calling, and sequence quality checks. This is the command line version of nextclade.
Information
- Version: 0.12.0
- Added: February, 2021
Usage
See versions of nextclade which are available:
$ module avail nextclade
Load one version into your environment and run it:
$ module load nextclade/0.12.0 $ nextclade.js
Installation
Notes from the sysadmin during installation:
$ sudo yum install rh-nodejs12-nodejs.x86_64 $ cd /tmp $ git clone https://github.com/nextstrain/nextclade.git $ cd nextclade $ git checkout 0.12.0 $ cd packages/web $ cp .env.example .env $ export PATH=$PATH:/opt/rh/rh-nodejs12/root/usr/bin $ npm config set cache /tmp/aorth-npm $ npm install yarn $ npx yarn cli:prod:build $ sudo mkdir -p /export/apps/nextclade/0.12.0/bin $ sudo cp ../cli/dist/nextclade.js /export/apps/nextclade/0.12.0/bin
nextclade-software.1613299312.txt.gz · Last modified: 2021/02/14 10:41 by aorth