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MultiQC is a reporting tool that parses summary statistics from results and log files generated by other bioinformatics tools. MultiQC doesn't run other tools for you - it's designed to be placed at the end of analysis pipelines or to be run manually when you've finished running your tools.



See which versions of multiqc are available:

$ module avail multiqc

Load one version into your environment and run it:

$ module load multiqc/1.6
$ multiqc


Notes from the sysadmin during installation:

$ cd /tmp
$ sudo mkdir -p /export/apps/multiqc/1.6
$ sudo chown aorth /export/apps/multiqc/1.6
$ python3 -m venv /export/apps/multiqc/1.6
$ source /export/apps/multiqc/1.6/bin/activate
$ pip install multiqc==1.6
$ sudo chown -R root:root /export/apps/multiqc/1.6
multiqc-software.txt · Last modified: 2020/09/15 12:41 by aorth