Differences

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--- minimap2-software [2021/11/28 08:52] – aorth
+++ minimap2-software [2025/03/03 07:23] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest version: 2.22
+  * Latest version: 2.28
   * Added: November, 2018
-  * Updated: August, 2021
+  * Updated: March, 2025
   * Link: https://lh3.github.io/minimap2/
 ===== Usage =====
-See versions of minimap2 that are available:
+See versions that are available:
 <code>$ module avail minimap2</code>
 Load one version into your environment and run it:
-<code>$ module load minimap2/2.22
+<code>$ module load minimap2/2.28
 $ minimap2</code>
@@ Line 21: / Line 21: @@
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/lh3/minimap2/releases/download/v2.22/minimap2-2.22_x64-linux.tar.bz2
+<code>$ cd /tmp
-$ tar xf minimap2-2.22_x64-linux.tar.bz2
+$ wget https://github.com/lh3/minimap2/releases/download/v2.28/minimap2-2.28.tar.bz2
-$ sudo mkdir -p /export/apps/minimap2/2.22/bin
+$ tar xf minimap2-2.28.tar.bz2
-$ cd minimap2-2.22_x64-linux
+$ cd minimap2-2.28
-$ sudo cp README.md LICENSE.txt /export/apps/minimap2/2.22
+$ make
-$ sudo cp paftools.js k8 minimap2 /export/apps/minimap2/2.22/bin</code>
+$ sudo mkdir -p /export/apps/minimap2/2.28/{bin,include,lib}
+$ sudo cp minimap2 /export/apps/minimap2/2.28/bin
+$ sudo cp *.h /export/apps/minimap2/2.28/include
+$ sudo cp libminimap2.a /export/apps/minimap2/2.28/lib
+$ sudo cp LICENSE.txt README.md FAQ.md code_of_conduct.md NEWS.md /export/apps/minimap2/2.28</code>
+//Note:// I compiled this instead of using the pre-compiled binaries because I wanted to include the headers and static library for use by other programs.