masurca-software
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Table of Contents
MaSuRCA
The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.
Information
- Version: 3.3.1
- Added: September, 2014
- Updated: April, 2019
Usage
See versions of masurca which are available:
$ module avail masurca
Load one version into your environment and run it:
$ module load masurca/3.3.1 $ masurca
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/alekseyzimin/masurca/releases/download/v3.3.1/MaSuRCA-3.3.1.tar.gz $ tar xf MaSuRCA-3.3.1.tar.gz $ cd MaSuRCA-3.3.1 $ sudo mkdir /export/apps/masurca/3.3.1 $ sudo chown aorth /export/apps/masurca/3.3.1 $ sudo yum install perl-Env.noarch $ DEST=/export/apps/masurca/3.3.1 ./install.sh $ sudo chown -R root:root /export/apps/masurca/3.3.1
masurca-software.1554132432.txt.gz · Last modified: 2019/04/01 15:27 by aorth