ILRI Research Computing

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====== MaSuRCA ======
The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.

===== Information =====

  * Version: 4.1.0
  * Added: September, 2014
  * Updated: June, 2023
  * Link: https://github.com/alekseyzimin/masurca

===== Usage =====

See versions which are available:
<code>$ module avail masurca</code>

Load one version into your environment and run it:
<code>$ module load masurca/4.1.0
$ masurca</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/alekseyzimin/masurca/releases/download/v4.1.0/MaSuRCA-4.1.0.tar.gz
$ tar xf MaSuRCA-4.1.0.tar.gz
$ cd MaSuRCA-4.1.0
$ sudo mkdir /export/apps/masurca/4.1.0
$ sudo chown aorth /export/apps/masurca/4.1.0
$ DEST=/export/apps/masurca/4.1.0 ./install.sh
$ sudo chown -R root:root /export/apps/masurca/4.1.0</code>