masurca-software
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Table of Contents
MaSuRCA
MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).
Information
- Version: 2.3.2
- Added: September, 2014
Usage
See versions of masurca which are available
module avail masurca
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=38900637&d=47784a9fd97c4cc396300a9c11cc9ab3096b11c3' -O MaSuRCA-2.3.2.tar.gz $ tar xf MaSuRCA-2.3.2.tar.gz $ cd MaSuRCA-2.3.2 $ mkdir -p /export/apps/masurca/2.3.2 $ sudo chown aorth /export/apps/masurca/2.3.2 $ scl enable devtoolset-2 bash $ DEST=/export/apps/masurca/2.3.2 ./install.sh $ sudo chown -R root:root /export/apps/masurca/2.3.2
Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html
masurca-software.1414924214.txt.gz · Last modified: 2014/11/02 10:30 by aorth