Differences

This shows you the differences between two versions of the page.

--- mafft-software [2018/01/15 16:47] – created aorth
+++ mafft-software [2021/03/15 12:26] – aorth
@@ Line 2: / Line 2: @@
 MAFFT is a multiple sequence alignment program for unix-like operating systems.  It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
-  * Latest Version: 7.313
+  * Latest Version: 7.475
-  * Added: 2011
+  * Added: October, 2011
-  * Updated: January, 2018
+  * Updated: March, 2021
   * Link: https://mafft.cbrc.jp/alignment/software/
@@ Line 14: / Line 14: @@
 Load a particular version of mafft:
-<code>$ module load mafft/7.313</code>
+<code>$ module load mafft/7.475</code>
 ===== Installation =====
@@ Line 20: / Line 20: @@
 <code>$ cd /tmp
-$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-src.tgz
+$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.475-with-extensions-src.tgz
-$ tar xf mafft-7.313-with-extensions-src.tgz
+$ cd mafft-7.475-with-extensions/core
-$ cd mafft-7.313-with-extensions/core
+$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile
-$ make clean
 $ make
-$ sudo mkdir -p /export/apps/mafft/7.313
+$ sudo mkdir -p /export/apps/mafft/7.475
-$ sudo chown aorth /export/apps/mafft/7.313
+$ sudo chown aorth /export/apps/mafft/7.475
 $ make install
 $ cd ../extensions
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile
+$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile
-$ make clean
 $ make
 $ make install
-$ sudo chown -R root:root /export/apps/mafft/7.313</code>
+$ sudo chown -R root:root /export/apps/mafft/7.475</code>