mafft-software
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Table of Contents
mafft
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
- Latest Version: 7.313
- Added: 2011
- Updated: January, 2018
Usage
Show all available versions of mafft:
$ module avail mafft
Load a particular version of mafft:
$ module load mafft/7.313
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-src.tgz $ tar xf mafft-7.313-with-extensions-src.tgz $ cd mafft-7.313-with-extensions/core $ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile $ make clean $ make $ sudo mkdir -p /export/apps/mafft/7.313 $ sudo chown aorth /export/apps/mafft/7.313 $ make install $ cd ../extensions $ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.313/' Makefile $ make clean $ make $ make install $ sudo chown -R root:root /export/apps/mafft/7.313
mafft-software.1516034837.txt.gz · Last modified: 2018/01/15 16:47 by aorth