mafft-software
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Table of Contents
mafft
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
- Latest Version: 7.475
- Added: October, 2011
- Updated: March, 2021
Usage
Show all available versions of mafft:
$ module avail mafft
Load a particular version of mafft:
$ module load mafft/7.475
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://mafft.cbrc.jp/alignment/software/mafft-7.475-with-extensions-src.tgz $ cd mafft-7.475-with-extensions/core $ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile $ make $ sudo mkdir -p /export/apps/mafft/7.475 $ sudo chown aorth /export/apps/mafft/7.475 $ make install $ cd ../extensions $ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile $ make $ make install $ sudo chown -R root:root /export/apps/mafft/7.475
mafft-software.1615811175.txt.gz · Last modified: 2021/03/15 12:26 by aorth