Visualization and analysis software for Hi-C data

• Version: 1.11.08
• Added: November, 2020
• Link: https://github.com/aidenlab/Juicebox

See versions of juicebox which are available:

$ module avail juicebox

Load one version into your environment and run it:

$ module load juicebox/1.11.08
$ juicebox

Note: Juicebox is a graphical application. You must enable X11 forwarding in your SSH client when connecting to HPC in order to use it.

Notes from the sysadmin during installation:

$ wget https://s3.amazonaws.com/hicfiles.tc4ga.com/public/Juicebox/Juicebox_1.11.08.jar
$ sudo mkdir -p /export/apps/juicebox/1.11.08
$ sudo cp ~/Juicebox_1.11.08.jar /export/apps/juicebox/1.11.08

I created a generic juicebox wrapper for Juicebox_1.11.08.jar, as it must otherwise be run with java -jar .. and is rather user-unfriendly.

/export/apps/juicebox/1.11.08/juicebox:

#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)

java -jar $PREFIX/Juicebox_1.11.08.jar $*