ivar-software
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Table of Contents
ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Information
- Version: 1.3
- Added: January, 2021
Usage
See versions of ivar that are available:
$ module avail ivar
Load one version into your environment and run it:
$ module load ivar/1.3 $ ivar
Installation
Notes from the sysadmin during installation.
$ cd /tmp $ wget https://github.com/andersen-lab/ivar/archive/v1.3.tar.gz $ tar xf v1.3.tar.gz $ cd ivar-1.3 # iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5 $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++ $ scl enable devtoolset-7 bash $ ./autogen.sh $ module load htslib/1.11 $ ./configure --with-hts=/export/apps/htslib/1.11 --prefix=/export/apps/ivar/1.3 $ make $ sudo mkdir -p /export/apps/ivar/1.3 $ sudo chown aorth /export/apps/ivar/1.3 $ make install $ sudo chown -R root:root /export/apps/ivar/1.3
ivar-software.1630833445.txt.gz · Last modified: 2021/09/05 09:17 by aorth