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ivar-software

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ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Information

Usage

See versions of ivar that are available:

$ module avail ivar

Load one version into your environment and run it:

$ module load ivar/1.3
$ ivar

Installation

Notes from the sysadmin during installation.

$ cd /tmp
$ wget https://github.com/andersen-lab/ivar/archive/v1.3.tar.gz
$ tar xf v1.3.tar.gz
$ cd ivar-1.3
# iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++
$ scl enable devtoolset-7 bash
$ ./autogen.sh
$ module load htslib/1.11
$ ./configure --with-hts=/export/apps/htslib/1.11 --prefix=/export/apps/ivar/1.3
$ make
$ sudo mkdir -p /export/apps/ivar/1.3
$ sudo chown aorth /export/apps/ivar/1.3
$ make install
$ sudo chown -R root:root /export/apps/ivar/1.3
ivar-software.txt · Last modified: 2021/01/17 10:14 by aorth