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iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.



See versions of ivar that are available:

$ module avail ivar

Load one version into your environment and run it:

$ module load ivar/1.3.1
$ ivar


Notes from the sysadmin during installation.

$ cd /tmp
$ wget
$ tar xf v1.3.1.tar.gz 
$ cd ivar-1.3.1
# iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++
$ scl enable devtoolset-7 bash
$ ./
$ module load htslib/1.11
$ ./configure --with-hts=/export/apps/htslib/1.11 --prefix=/export/apps/ivar/1.3.1
$ make
$ sudo mkdir -p /export/apps/ivar/1.3.1
$ sudo chown aorth /export/apps/ivar/1.3.1
$ make install
$ sudo chown -R root:root /export/apps/ivar/1.3.1
ivar-software.txt · Last modified: 2021/09/05 09:25 by aorth