interproscan-software
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Table of Contents
Interproscan
InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains.
Information
- Version: 5.25-64.0
- Added: July, 2015
- August, 2017
Usage
Check for available versions:
$ module avail interproscan
Load the latest version into your environment:
$ module load interproscan/5.25-64.0
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz.md5 $ md5sum -c interproscan-5.25-64.0-64-bit.tar.gz.md5 $ tar -pxvzf interproscan-5.25-64.0-*-bit.tar.gz $ cd interproscan-5.25-64.0/data $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-11.1.tar.gz $ tar -pxvzf panther-data-11.1.tar.gz $ sudo mkdir /export/apps/interproscan/5.25-64.0 $ sudo cp -r * /export/apps/interproscan/5.25-64.0
Test:
$ module load interproscan/5.25-64.0 $ interproscan.sh -i /export/apps/interproscan/5.25-64.0/test_proteins.fasta -f tsv
Note: Interproscan 5.25-64.0 now ships components that depend on CentOS 7… so make sure you run it on compute03.
interproscan-software.1503505573.txt.gz · Last modified: 2017/08/23 16:26 by aorth