ILRI Research Computing

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====== Interproscan ======
InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains.


===== Information =====

  * Version: 5.25-64.0
  * Added: July, 2015
  * Updated: August, 2017
  * Link: https://github.com/ebi-pf-team/interproscan

===== Usage =====

Check for available versions:

<code>$ module avail interproscan</code>

Load the latest version into your environment:

<code>$ module load interproscan/5.25-64.0</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz.md5
$ md5sum -c interproscan-5.25-64.0-64-bit.tar.gz.md5
$ tar -pxvzf interproscan-5.25-64.0-*-bit.tar.gz
$ cd interproscan-5.25-64.0/data
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-11.1.tar.gz
$ tar -pxvzf panther-data-11.1.tar.gz
$ sudo mkdir /export/apps/interproscan/5.25-64.0
$ sudo cp -r * /export/apps/interproscan/5.25-64.0</code>

Test:

<code>$ module load interproscan/5.25-64.0
$ interproscan.sh -i /export/apps/interproscan/5.25-64.0/test_proteins.fasta -f tsv</code>