interproscan-software
This is an old revision of the document!
Table of Contents
Interproscan
InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains.
Information
- Version: 5.13
- Added: July, 2015
- Updated: July, 2015
Usage
$ module avail interproscan
Installation
Notes from the sysadmin during installation:
- requirements $ module load python/2.7.8 $ module load perl - install interproscan $ cd /tmp/ $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz.md5 $ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5 $ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz - install Panther models $ cd /tmp/interproscan-5.13-52.0/data $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz.md5 $ md5sum -c panther-data-9.0.tar.gz.md5 $ tar -xvf panther-data-9.0.tar.gz $ mkdir /export/apps/interproscan/5.13/ $ mv /tmp/interproscan-5.13-52.0/* /export/apps/interproscan/5.13/ - run tests $ interactive $ module load interproscan/5.13 $ interproscan.sh -i /export/apps/interproscan/5.13/test_proteins.fasta -f tsv
interproscan-software.1503408900.txt.gz · Last modified: 2017/08/22 13:35 by aorth