interproscan-software
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Table of Contents
Interproscan
Information
- Version: 5.13
- Added: July, 2015
- Updated: July, 2015
Usage
Scans a range of protein signatures against your sequence.
$ module avail interproscan
Installation
Notes from the sysadmin during installation:
- requirements $ module load python/2.7.8 $ module load perl - install interproscan $ cd /tmp/ $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz.md5 $ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5 $ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz - install Panther models $ cd /tmp/interproscan-5.13-52.0/data $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz $ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz.md5 $ md5sum -c panther-data-9.0.tar.gz.md5 $ tar -xvf panther-data-9.0.tar.gz $ mkdir /export/apps/interproscan/5.13/ $ mv /tmp/interproscan-5.13-52.0/* /export/apps/interproscan/5.13/ - run tests $ interactive $ module load interproscan/5.13 $ interproscan.sh -i /export/apps/interproscan/5.13/test_proteins.fasta -f tsv
interproscan-software.1435818390.txt.gz · Last modified: 2015/07/02 06:26 by joguya