Bioinformatics tool to find integrons in bacterial genomes.

• Version: 2.0.2
• Added: November, 2023
• Link: https://github.com/gem-pasteur/Integron_Finder

See which versions are available:

$ module avail integron-finder

Load one version into your environment and run it:

$ module load integron-finder/2.0.2
$ integron_finder

Note: you can control the number of CPU threads used with the –cpu option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/integron-finder/2.0.2
$ sudo chown aorth /export/apps/integron-finder/2.0.2
$ module load python/3.9
$ python -m venv /export/apps/integron-finder/2.0.2
$ source /export/apps/integron-finder/2.0.2/bin/activate
$ pip install integron_finder==2.0.2
$ sudo chown -R root:root /export/apps/integron-finder/2.0.2