Bioinformatics tool to find integrons in bacterial genomes.

• Version: 2.0.2
• Added: November, 2023
• Link: https://github.com/gem-pasteur/Integron_Finder

See which versions are available:

$ module avail integron-finder

Load one version into your environment and run it:

$ module load integron-finder/2.0.2
$ integron_finder

Note: you can control the number of CPU threads used with the --cpu option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/integron-finder/2.0.2
$ sudo chown aorth /export/apps/integron-finder/2.0.2
$ module load python/3.9
$ python -m venv /export/apps/integron-finder/2.0.2
$ source /export/apps/integron-finder/2.0.2/bin/activate
$ pip install integron_finder==2.0.2
$ sudo chown -R root:root /export/apps/integron-finder/2.0.2