htslib-software
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Table of Contents
htslib
htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools
Information
- Latest Version: 1.11
- Added: March, 2015
- Updated: January, 2021
Usage
See versions of htslib which are available:
$ module avail htslib
Load one version into your environment and run some common commands:
$ module load htslib/1.11 $ tabix $ bgzip
Installation
Notes from the sysadmin during installation:
$ cd /tmp/ $ wget https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2 $ tar xf htslib-1.11.tar.bz2 $ cd htslib-1.11 $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.11 $ make $ sudo mkdir -p /export/apps/htslib/1.11 $ sudo chown aorth /export/apps/htslib/1.11 $ make install $ sudo chown -R root:root /export/apps/htslib/1.11
htslib-software.1609924591.txt.gz · Last modified: 2021/01/06 09:16 by aorth