htslib-software
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Table of Contents
htslib
htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools
Information
- Latest Version: 1.6
- Added: March, 2015
- Updated: Оctober, 2017
Usage
See versions of htslib which are available:
$ module avail htslib
Load one version into your environment:
$ module load htslib/1.6
Installation
Notes from the sysadmin during installation:
$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2 $ tar xf htslib-1.6.tar.bz2 $ cd htslib-1.6 $ sudo mkdir /export/apps/htslib/1.6 $ sudo chown aorth /export/apps/htslib/1.6 $ scl enable devtoolset-4 bash $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6 $ make $ make install $ sudo chown -R root:root /export/apps/htslib/1.6
htslib-software.1514128667.txt.gz · Last modified: 2017/12/24 15:17 by aorth