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htslib-software

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htslib

htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools

Information

Usage

See versions of htslib which are available

$ module avail htslib

Load and run htslib

$ module load htslib 

Installation

Notes from the sysadmin during installation:

cd /tmp
wget https://github.com/samtools/htslib/archive/1.2.1.tar.gz
tar -xvf 1.2.1.tar.gz
cd htslib-1.2.1/
scl enable devtoolset-2 bash
sudo mkdir -p /export/apps/htslib/1.2.1
sudo chown joguya:joguya /export/apps/htslib/1.2.1
autoreconf
./configure CC=clang --prefix=/export/apps/htslib/1.2.1
make
make install
sudo chown root:root /export/apps/htslib/1.2.1
htslib-software.1427446542.txt.gz · Last modified: 2015/03/27 08:55 by joguya