htslib-software
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Table of Contents
HTSlib
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools
Information
- Version: 1.2.1
- Added: March, 2015
Usage
See versions of htslib which are available
$ module avail htslib
Load and run htslib
$ module load htslib
Installation
Notes from the sysadmin during installation:
cd /tmp wget https://github.com/samtools/htslib/archive/1.2.1.tar.gz tar -xvf 1.2.1.tar.gz cd htslib-1.2.1/ scl enable devtoolset-2 bash sudo mkdir -p /export/apps/htslib/1.2.1 sudo chown joguya:joguya /export/apps/htslib/1.2.1 autoreconf ./configure CC=clang --prefix=/export/apps/htslib/1.2.1 make make install sudo chown root:root /export/apps/htslib/1.2.1
htslib-software.1427446501.txt.gz · Last modified: 2015/03/27 08:55 by joguya