Differences

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--- htslib-software [2016/03/24 15:13] – [Information] joguya
+++ htslib-software [2017/12/24 15:17] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 1.3
+  * Latest Version: 1.6
   * Added: March, 2015
-  * Updated: March, 2016
+  * Updated: Оctober, 2017
   * Link: https://github.com/samtools/htslib
 ===== Usage =====
-=== See versions of htslib which are available ===
+See versions of htslib which are available:
 <code>$ module avail htslib</code>
-=== Load and run htslib ===
+Load one version into your environment:
-<code>$ module load htslib </code>
+<code>$ module load htslib/1.6</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>cd /tmp
+<code>$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2
-wget https://github.com/samtools/htslib/archive/1.2.1.tar.gz
+$ tar xf htslib-1.6.tar.bz2
-tar -xvf 1.2.1.tar.gz
+$ cd htslib-1.6
-cd htslib-1.2.1/
+$ sudo mkdir /export/apps/htslib/1.6
-scl enable devtoolset-2 bash
+$ sudo chown aorth /export/apps/htslib/1.6
-sudo mkdir -p /export/apps/htslib/1.2.1
+$ scl enable devtoolset-4 bash
-sudo chown joguya:joguya /export/apps/htslib/1.2.1
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6
-autoreconf
+$ make
-./configure CC=clang --prefix=/export/apps/htslib/1.2.1
+$ make install
-make
+$ sudo chown -R root:root /export/apps/htslib/1.6</code>
-make install
-sudo chown root:root /export/apps/htslib/1.2.1
-</code>