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--- htslib-software [2015/03/27 08:55] – created joguya
+++ htslib-software [2017/02/05 11:40] – joguya
@@ Line 1: / Line 1: @@
-====== HTSlib ======
+====== htslib ======
-HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools
+htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools
 ===== Information =====
-  * Version: 1.2.1
+  * Latest Version: 1.3.2
   * Added: March, 2015
+  * Updated: February, 2017
   * Link: https://github.com/samtools/htslib
@@ Line 14: / Line 15: @@
 === Load and run htslib ===
-<code>$ module load htslib </code>
+<code>$ module load htslib/1.3.2 </code>
 ===== Installation ======
@@ Line 20: / Line 21: @@
 <code>cd /tmp
-wget https://github.com/samtools/htslib/archive/1.2.1.tar.gz
+$ wget -qO- "https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2" | tar xjv
-tar -xvf 1.2.1.tar.gz
+$ sudo mkdir /export/apps/htslib/1.3.2/
-cd htslib-1.2.1/
+$ sudo chown -R joguya:joguya /export/apps/htslib/1.3.2/
-scl enable devtoolset-2 bash
+LD_LIBRARY_PATH=/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/curl/7.47.1/include" ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.3.2/
-sudo mkdir -p /export/apps/htslib/1.2.1
+$ make
-sudo chown joguya:joguya /export/apps/htslib/1.2.1
+$ make install
-autoreconf
+$ sudo chown -R root:root /export/apps/htslib/1.3.2
-./configure CC=clang --prefix=/export/apps/htslib/1.2.1
-make
-make install
-sudo chown root:root /export/apps/htslib/1.2.1
 </code>