HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads to a population of human genomes.

• Latest Version: 2.1.0
• Added: September, 2018
• Link: http://ccb.jhu.edu/software/hisat2/index.shtml

See available versions of hisat2:

$ module avail hisat2

Load one version into your environment and run it:

$ module load hisat2/2.1.0
$ hisat2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip
$ unzip hisat2-2.1.0-Linux_x86_64.zip
$ sudo cp -r hisat2-2.1.0 /export/apps/hisat2/2.1.0