GapFiller is a stand-alone program for closing gaps within pre-assembled scaffolds.

• Latest Version: 1.10
• Added: November, 2016
• Link: https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller

See which versions of gapfiller are available:

$ module avail gapfiller

Load gapfiller

$ module load gapfiller/1.10

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz
$ cd GapFiller_v1-10_linux-x86_64
$ dos2unix GapFiller.pl
$ sudo mkdir -p /export/apps/gapfiller/1.10
$ sudo cp -r . /export/apps/gapfiller/1.10