flash-software
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FLASH
FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies.
v1.2.11
- Version: 1.2.11
- Added: December, 2014
Usage
- Show all available versions of flash
module avail flash
- Load flash module:
module load flash/1.2.11
- get quick help:
flash --help
Installation
- Download flash src tarball, extract it & compile it
wget "http://downloads.sourceforge.net/project/flashpage/FLASH-1.2.11.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fflashpage%2F&ts=1418712841&use_mirror=tenet" -O FLASH-1.2.11.tar.gz tar -xvf FLASH-1.2.11.tar.gz cd FLASH-1.2.11 make sudo mkdir -p /export/apps/FLASH/1.2.11 sudo cp flash /export/apps/FLASH/1.2.11/
- flash module file
#%Module1.0 ##################################################################### ## ## FLASH Modulefile ## By James Oguya, j.oguya@cgiar.org ## December, 2014 ## set appname FLASH set version 1.2.11 set prefix /export/apps/${appname}/${version} set exec_prefix ${prefix} set url "http://sourceforge.net/projects/flashpage/" set msg "FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies..\nFLASH Official Site: $url\n" module-whatis $msg proc ModulesHelp { } { puts stderr "$msg" } conflict FLASH prepend-path PATH ${exec_prefix}
- deploy the new module using ansible
ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=module
flash-software.1418721542.txt.gz · Last modified: 2014/12/16 09:19 by joguya