ILRI Research Computing

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====== FLASH ======
FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies.

===== Information =====
  * Version: 1.2.11
  * Added: December, 2014
  * Link: http://sourceforge.net/projects/flashpage

===== Usage =====
Show all available versions of flash:

<code>$ module avail flash</code>

Load flash into your environment:

<code>$ module load flash/1.2.11</code>

Get quick help:
<code>$ flash --help</code>

===== Installation =====
Notes from the sysadmin during installation.

<code>$ wget "http://downloads.sourceforge.net/project/flashpage/FLASH-1.2.11.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fflashpage%2F&ts=1418712841&use_mirror=tenet" -O FLASH-1.2.11.tar.gz
$ tar -xvf FLASH-1.2.11.tar.gz
$ cd FLASH-1.2.11
$ make
$ sudo mkdir -p /export/apps/FLASH/1.2.11
$ sudo cp flash /export/apps/FLASH/1.2.11</code>