faststructure-software
Table of Contents
fastStructure
fastStructure is an algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x.
Information
- Version: 1.0
- Added: May, 2014
- Updated: August, 2015
Usage
See versions of fastStructure which are available:
$ module avail fastSTRUCTURE
Installation
Notes from the sysadmin during installation:
wget https://github.com/rajanil/fastStructure/archive/v1.0.tar.gz tar -xvf v1.0.tar.gz cd fastStructure-1.0/ module load python/2.7.8 scl enable devtoolset-2 bash cd vars/ python setup.py build_ext --inplace cd ../ python setup.py build_ext --inplace chmod 755 structure.py distruct.py chooseK.py sudo mkdir /export/apps/fastSTRUCTURE/1.0/ sudo cp -r . /export/apps/fastSTRUCTURE/1.0/
faststructure-software.txt · Last modified: 2017/02/17 14:30 by joguya