fastq-scan reads a FASTQ from STDIN and outputs summary statistics (read lengths, per-read qualities, per-base qualities) in JSON format.

• Version: 1.0.1
• Added: April, 2025
• Link: https://github.com/rpetit3/fastq-scan

See versions that are available:

$ module avail fastq-scan

Load one version into your environment and run it:

$ module load fastq-scan/1.0.1
$ fastq-scan

Notes from the sysadmin during installation.

$ cd /tmp
$ git clone https://github.com/rpetit3/fastq-scan.git -b v1.0.1
$ cd fastq-scan
$ make
$ sudo mkdir -p /export/apps/fastq-scan/1.0.1/bin
$ sudo cp fastq-scan /export/apps/fastq-scan/1.0.1/bin