cutadapt-software
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Table of Contents
cutadapt
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Information
- Version: 1.18
- Added: June, 2015
- Updated: January, 2019
Usage
See available versions of cutadapt:
$ module avail cutadapt
Load one version into your environment and run it:
$ module load cutadapt/1.18 $ cutadapt
Installation
Notes from the sysadmin during installation:
$ sudo mkdir -p /export/apps/cutadapt/1.18 $ sudo chown aorth /export/apps/cutadapt/1.18 $ python36 -m venv /export/apps/cutadapt/1.18 $ . /export/apps/cutadapt/1.18/bin/activate $ pip install --upgrade pip setuptools $ pip install cutadapt==v1.18 $ sudo chown -R root:root /export/apps/cutadapt/1.18
cutadapt-software.1547980923.txt.gz · Last modified: 2019/01/20 10:42 by aorth