cutadapt-software
Table of Contents
cutadapt
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Information
- Version: 5.0
- Added: June, 2015
- Updated: April, 2025
Usage
See available versions:
$ module avail cutadapt
Load one version into your environment and run it:
$ module load cutadapt/5.0 $ cutadapt
Installation
Notes from the sysadmin during installation:
$ module load python/3.10 $ sudo mkdir -p /export/apps/cutadapt/5.0 $ sudo chown aorth:aorth /export/apps/cutadapt/5.0 $ python -m venv /export/apps/cutadapt/5.0 $ python -m pip install --upgrade pip wheel setuptools $ python -m pip install cutadapt==5.0 $ sudo chown -R root:root /export/apps/cutadapt/5.0
cutadapt-software.txt · Last modified: 2025/04/30 09:01 by aorth