Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.

• Version: 0.8.10
• Added: November, 2020
• Link: https://github.com/open2c/cooler

See which versions of cooler are available:

$ module avail cooler

Load one version into your environment and run it:

$ module load cooler/0.8.10
$ cooler

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/cooler/0.8.10
$ sudo chown aorth /export/apps/cooler/0.8.10
$ python3 -m venv /export/apps/cooler/0.8.10
$ source /export/apps/cooler/0.8.10/bin/activate
$ pip install cooler==0.8.10
$ sudo chown -R root:root /export/apps/cooler/0.8.10