BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome.

• Latest version: 0.7.12
• Added: April, 2013
• Updated: March, 2015
• Link: http://bio-bwa.sourceforge.net

module avail bwa

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1426229921&use_mirror=liquidtelecom' -O bwa-0.7.12.tar.bz2
$ tar xf bwa-0.7.12.tar.bz2 
$ cd bwa-0.7.12
$ sed -i 's/gcc$/clang/' Makefile
$ make
$ sudo mkdir -p /export/apps/bwa/0.7.12/{bin,share/man/man1}
$ sudo cp bwa *.pl /export/apps/bwa/0.7.12/bin
$ sudo cp bwa.1 /export/apps/bwa/0.7.12/share/man/man1