Differences

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--- bwa-software [2015/07/28 11:39] – joguya
+++ bwa-software [2024/09/05 12:28] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest version: 0.7.12
+  * Latest version: 0.7.18
   * Added: April, 2013
-  * Updated: March, 2015
+  * Updated: August, 2024
-  * Link: http://bio-bwa.sourceforge.net
+  * Link: https://github.com/lh3/bwa
 ===== Usage =====
-=== See versions of bwa which are available ===
+See versions which are available:
-<code>module avail bwa</code>
+<code>$ module avail bwa</code>
+Load one version into your environment and run it:
+<code>$ module load bwa/0.7.18
+$ bwa</code>
 ===== Installation ======
@@ Line 18: / Line 24: @@
 <code>$ cd /tmp
-$ wget 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1426229921&use_mirror=liquidtelecom' -O bwa-0.7.12.tar.bz2
+$ git clone https://github.com/lh3/bwa.git -b v0.7.18
-$ tar xf bwa-0.7.12.tar.bz2
+$ cd bwa
-$ cd bwa-0.7.12
-$ sed -i 's/gcc$/clang/' Makefile
 $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.12/{bin,share/man/man1}
+$ sudo mkdir -p /export/apps/bwa/0.7.18/{bin,share/man/man1}
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.12/bin
+$ sudo cp bwa *.pl /export/apps/bwa/0.7.18/bin
-$ sudo cp bwa.1 /export/apps/bwa/0.7.12/share/man/man1</code>
+$ sudo cp bwa.1 /export/apps/bwa/0.7.18/share/man/man1
+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.18</code>