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blat

BLAT performs extremely fast mRNA/DNA alignments, and cross-species protein alignments.

Information

Usage

See versions of blat which are available:

$ module avail blat

Load one version into your environment and run it:

$ module load blat/37x1
$ blat

Installation

Notes from the sysadmin during installation:

$ cd /tmp
# Check version from readme at http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat
$ wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat
$ sudo mkdir -p /export/apps/blat/37x1/bin
$ sudo cp blat /export/apps/blat/37x1/bin
$ sudo chmod +x /export/apps/blat/37x1/bin/blat
blat-software.txt · Last modified: 2023/01/24 08:29 by aorth