Bedtools is a fast, flexible toolset for genome arithmetic.

• Version: 2.25.0
• Added: January, 2013
• Updated: June, 2016
• Link: https://bedtools.readthedocs.io/en/latest/

See which versions of bedtools are available:

$ module avail bedtools

Load bedtools

$ module load bedtools/2.25.0

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz
$ tar -xvf bedtools-2.25.0.tar.gz
$ scl enable devtoolset-2 bash
$ sudo mkdir /export/apps/bedtools/2.25.0/
$ sudo chown -R joguya:joguya /export/apps/bedtools/2.25.0/
$ sed -i 's#prefix = /usr/local#prefix = /export/apps/bedtools/2.25.0#' Makefile
$ make
$ make install
$ sudo chown -R root:root /export/apps/bedtools/2.25.0/