assembly-scan reads an assembly in FASTA format and outputs summary statistics in TSV or JSON format.

• Version: 1.0.0
• Added: April, 2025
• Link: https://github.com/rpetit3/assembly-scan

See versions that are available:

$ module avail assembly-scan

Load one version into your environment and run it:

$ module load assembly-scan/1.0.0
$ assembly-scan

Notes from the sysadmin during installation.

$ sudo mkdir -p /export/apps/assembly-scan/1.0.0/bin
$ sudo wget https://raw.githubusercontent.com/rpetit3/assembly-scan/refs/tags/v1.0.0/bin/assembly-scan -O /export/apps/assembly-scan/1.0.0/bin
$ sudo chmod +x /export/apps/assembly-scan/1.0.0/bin/assembly-scan

Note: this seems to only depend on Python 3.7+ with no external dependencies.