artic-tools-software
Table of Contents
artic-tools
A set of tools for viral amplicon schemes:
- download primer schemes and reference sequences
- primer scheme validation
- alignment softmasking
- vcf filtering
Information
- Version: 0.3.1
- Added: February, 2023
Usage
See which versions are available:
$ module avail artic-tools
Load one version into your environment and run it:
$ module load artic-tools/0.3.1 $ artic-tools
Installation
Notes from the sysadmin during installation.
$ cd /tmp $ git clone --recursive https://github.com/will-rowe/artic-tools.git $ cd artic-tools $ git checkout v0.3.1 $ module load htslib/1.15.1 $ mkdir build $ cd build $ cmake .. -DHTS_LIB=/export/apps/htslib/1.15.1/lib/libhts.so -DHTS_INCLUDE_DIR=/export/apps/htslib/1.15.1/include/ -DCMAKE_INSTALL_PREFIX=/export/apps/artic-tools/0.3.1 $ make -j4 $ make test $ sudo mkdir -p /export/apps/artic-tools/0.3.1/bin $ sudo cp ../bin/artic-tools /export/apps/artic-tools/0.3.1/bin
artic-tools-software.txt · Last modified: 2023/02/20 08:02 by aorth