velvet-software
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Table of Contents
Velvet
Sequence assembler for very short reads.
Information
- Version: 1.2.10
- MAXKMERLENGTH: 31
- Added: November 15, 2012
- Updated: May 27, 2014
Usage
See versions of velvet which are available:
module avail velvet
Installation
Notes from the sysadmin during installation:
wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz tar xf velvet_1.2.10.tgz cd velvet_1.2.10 scl enable devtoolset-1.1 bash sed 's/MAXKMERLENGTH=[0-9].*$/MAXKMERLENGTH=64/' Makefile > Makefile.kmer64 make -f Makefile.kmer64 make -f Makefile.kmer64 cleanobj sudo cp -r . /export/apps/velvet/1.2.10-kmer64
velvet-software.1401185852.txt.gz · Last modified: 2014/05/27 10:17 by aorth