tools for processing and annotating VCF files, with focus on Plasmodium spp.

• Version: git-508cc19b
• Added: May, 2021
• Link: https://github.com/IDEELResearch/vcfdo

See versions of vcfdo which are available:

$ module avail vcfdo

Load one version into your environment and run it:

$ module load vcfdo/git-508cc19b
$ vcfdo

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/vcfdo/git-508cc19b
$ sudo chown -R aorth:aorth /export/apps/vcfdo/git-508cc19b
$ module load python/3.7
$ python3 -m venv /export/apps/vcfdo/git-508cc19b
$ source /export/apps/vcfdo/git-508cc19b/bin/activate
$ pip install --upgrade pip setuptools
$ pip install git+https://github.com/IDEELResearch/vcfdo
$ sudo chown -R root:root /export/apps/vcfdo/git-508cc19b