using-the-cluster
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
using-the-cluster [2022/11/22 08:51] – aorth | using-the-cluster [2023/01/06 06:14] (current) – aorth | ||
---|---|---|---|
Line 2: | Line 2: | ||
ILRI's high-performance computing cluster is currently composed of four dedicated " | ILRI's high-performance computing cluster is currently composed of four dedicated " | ||
- | * **hpc**: main login node, "master" of the cluster | + | * **hpc**: main login node, "head" of the cluster |
* **compute05**, | * **compute05**, | ||
* **compute07**: | * **compute07**: | ||
- | * **compute03**: | ||
- | To get access to the cluster you should talk to Jean-Baka | + | To get access to the cluster you should talk to Alan Orth or Jean-Baka in the Data and Research Methods Unit (Mara House). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. |
Line 23: | Line 22: | ||
==== Microsoft Windows ==== | ==== Microsoft Windows ==== | ||
- | If you are running Windows 10, you can access a simple ssh client by [[https:// | + | If you are running Windows 10+, you can access a simple ssh client by [[https:// |
Line 32: | Line 31: | ||
===== Cluster Organization ===== | ===== Cluster Organization ===== | ||
- | The cluster is arranged in a master/slave configuration; users log into HPC (the master) and use it as a " | + | The cluster is arranged in a head/compute |
{{: | {{: | ||
Line 38: | Line 37: | ||
^Machine | ^Machine | ||
- | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https:// | ||
|compute05 | 384 GB RAM \\ 48 CPUs \\ 1.6TB scratch | batch jobs \\ Most recent AMD EPYC CPUs, good for BLAST, structure, R, etc |{{https:// | |compute05 | 384 GB RAM \\ 48 CPUs \\ 1.6TB scratch | batch jobs \\ Most recent AMD EPYC CPUs, good for BLAST, structure, R, etc |{{https:// | ||
|compute06|256 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// | |compute06|256 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth