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using-the-cluster [2021/06/13 15:09] aorthusing-the-cluster [2022/05/03 09:17] aorth
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 ILRI's high-performance computing "cluster" is currently composed of 7 dedicated machines: ILRI's high-performance computing "cluster" is currently composed of 7 dedicated machines:
   * **hpc**: main login node, "master" of the cluster   * **hpc**: main login node, "master" of the cluster
-  * **compupte2**, **compute05**, **compute06**: used for batch and interactive jobs like BLAST, structure, R, etc (compute05 and compute06 have the newest AMD EPYC CPUs)+  * **compute05**, **compute06**: used for batch and interactive jobs like BLAST, structure, R, etc (compute05 and compute06 have the newest AMD EPYC CPUs)
   * **compute07**: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc)   * **compute07**: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc)
   * **compute03**: fast CPUs, but few of them   * **compute03**: fast CPUs, but few of them
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 ^Machine           ^Specifications                ^Uses                 ^1 hour status   ^ ^Machine           ^Specifications                ^Uses                 ^1 hour status   ^
-|compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute2&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | 
 |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute03&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute03&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
 |compute05 | 384 GB RAM \\ 48 CPUs \\ 1.6TB scratch | batch jobs \\ Most recent AMD EPYC CPUs, good for BLAST, structure, R, etc |{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute05&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | |compute05 | 384 GB RAM \\ 48 CPUs \\ 1.6TB scratch | batch jobs \\ Most recent AMD EPYC CPUs, good for BLAST, structure, R, etc |{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute05&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth