using-the-cluster
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using-the-cluster [2019/05/31 11:02] – mammoth has 8 CPUs, not 16. fixed that. jean-baka | using-the-cluster [2020/03/19 12:14] – jean-baka | ||
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====== Using the Cluster ====== | ====== Using the Cluster ====== | ||
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
- | * hpc: main login node, " | + | |
- | * taurus, compute2, compute04: used for batch and interactive jobs like BLAST, structure, R, etc | + | |
- | * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | + | |
- | * compute03: fast CPUs, but few of them | + | |
- | * compute04: batch jobs, has lots of disk space in ''/ | + | * **compute05**: batch jobs, has the fastest processors (AMD EPYC) |
To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | ||
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===== Cluster Organization ===== | ===== Cluster Organization ===== | ||
The cluster is arranged in a master/ | The cluster is arranged in a master/ | ||
- | {{:infrastructure-2018-fs8.png|}} | + | {{:hpc_topology_2019_web.png|}} |
==== Detailed Information ==== | ==== Detailed Information ==== |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth